0README

[Note - directories *Old/ should be missing from the web]

atom-fluctuations
|-- 0NOTE                obvious
|-- 0README              obvious
|-- yout184-dget.Data    trajectory data:  chi-2 of BPTI Tyr-35
|-- yout184.s            R commands for analysis of trajectory
|-- yout184-out.s        same, but to generate ps and txt files
|-- yout184-out.ps       plots generated by analsysis
`-- yout184-out.txt      text generated by analsysis


batch-calorimeter
|-- 0README               obvious
|-- calorimeter.data      data: time series calorimeter voltages
|-- commands.s            R commands for analysis of data
|-- results.fit           text generated by analsysis
`-- results.fit.ps        plots generated by analsysis


driven-protein-motions
|-- 0NOTE                        obvious
|-- 0README                      obvious
|-- exam1.data                   data: driven motion chi-2 of BPTI Tyr-35
|-- exam1.data.ps                plot of data
|-- fit.s                        R commands for analysis of data
|-- fit-output.s                 same, but to generate ps and txt files
|-- fit-output.ps                plots generated by analysis
`-- fit-output.txt               text generated by analysis


enzyme-kinetics-MM
`-- 0README                 obvious


enzyme-kinetics-nonlinear
|-- 0-Old                       directory: old files
|-- 0README                     obvious
|-- Plots                       directory
|   |-- ldh.simpfit.out.sgi         ldh.data, structured for ldhplot.all.s
|   |-- ldhplot.all.s               R commands to generate "fancy" plots
|   |-- ldhplot.lac-6250.ps         "fancy" plot
|   |-- ldhplot.pri.A-6246.ps       "fancy" plot
|   |-- ldhplot.pri.B-6244.ps       "fancy" plot
|   `-- ldhplot.sec-6248.ps         "fancy" plot
|-- ldh.data                    kinetic data for lactate dehyrodgenase
|-- tutorial.txt                long discussion ldh mechanism + fit [OLD! OLD!]
`-- short.txt                   same but short with cut/paste R commands


hemoglobin-oxygenation
|-- 0-Old                           directory
|-- 0README                         obvious
|-- exam1.tyuma.data                hemoglobin oxygention data
|-- commands.s                      R commands to analyze data
|-- weight_functions.s              source these before above analysis
|-- tyuma.ps                        plots generated by analysis
`-- tyuma_results_summary           text generated by analysis


percolation
|-- 0README                         obvious
|-- burn.gif                        12 summary images from xtoys "xburn"
|-- burn-data                       data from burn.gif: time + extent
|-- burn.s                          R commands: analysis of burn-data
|-- burn-output.ps                  plots generated by analysis
`-- perc.s                          R commands: fill a lattice randomly


tutorial-examples
|-- 0README                   obvious
|-- splusnotes.ps             Venables and Smith (1992) - Notes on S-Plus
|-- venables.s                R (S) commands from Venables and Smith
|-- Rplots.ps                 figures generated by sourcing "venables.s"
`-- morley.data               file of test data 


zimm_bragg-helix_coil
|-- 0-Old                           directory - old files
|-- 0README                         obvious
|-- comall.s                        R commands: plot zimm-bragg results
|-- comall.ps                       PS file of output from comall.s
|-- setup.s                         R commands - source first
`-- zimm.fn.s                       R commands - read in by setup.s


John Rupley
 rupley@u.arizona.edu -or- jar@rupley.com
 30 Calle Belleza, Tucson AZ 85716 - (520) 325-4533; fax - (520) 325-4991
 Dept. Biochemistry & Molecular Biophysics, Univ. Arizona, Tucson AZ 85721