0README

Wed Jul 27 23:05:42 MST 2005


|-- biphasic				directory - explore model: two protein
    |						    species, each irreversibly
    |						    reacting to give product;
    |						    related to lexA cleavage
    |-- 0NOTE
    |-- 1-README.2exp
    |
    |-- Makefile
    |-- biphasic				executable
    |-- biphasic.c				C source for function
    |
    |-- bgall.test				script to run biphasic
    |-- mk.data.awk
    |-- mk.plot
    |-- plotall.test				script to plot results
    |-- prep					script to prep results for plot
    |
    |-- test.data.9x				data, control input for biphasic
    |
    |-- test.out.9-1991				1991 results of fit, under 4d30
    |-- test.out.9x				current macosx results
    |
    |-- test.plot.9-1991			as above, plots
    `-- test.plot.9x


biphasic
	Play with triangle of irreversible reactions, wrt
	cleavage of lexA.

	The general reaction pathway is:

		    k2
		E2 ---> P
		^       ^
	    k12 |       |
		|       |
		E1 -----|
		    k1


The 1-README* pages give explanations of what code does;
written for john little;
analysis and modelling of lexA cleavage at high pH.

A neat little modelling program.


To test and compare macosx results with old sgi 4d30 results, 
e.g., for test.out-9x:

		bgall.test 9x
		plotall.test 9x
		diff test.data.9x */test.data.9
		diff test.out.9x */test.out.9
		vi *plot*x


John Rupley
 rupley@u.arizona.edu -or- jar@rupley.com
 30 Calle Belleza, Tucson AZ 85716 - (520) 325-4533; fax - (520) 325-4991
 Dept. Biochemistry & Molecular Biophysics, Univ. Arizona, Tucson AZ 85721
    
